PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G09490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 641aa    MW: 68478.1 Da    PI: 6.7134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G09490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-12292348155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++t+++Aa+a++ a++k++g
  OBART03G09490.1 292 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 348
                      78*******************88888885446656.77***99*************97 PP

2AP246.87.1e-15391442155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OBART03G09490.1 391 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 442
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14292358IPR016177DNA-binding domain
CDDcd000186.07E-18292356No hitNo description
PfamPF008471.4E-9292348IPR001471AP2/ERF domain
PROSITE profilePS5103217.662293356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-12293357IPR001471AP2/ERF domain
SMARTSM003802.1E-21293362IPR001471AP2/ERF domain
PRINTSPR003674.8E-6294305IPR001471AP2/ERF domain
CDDcd000186.83E-24391452No hitNo description
SuperFamilySSF541711.44E-17391451IPR016177DNA-binding domain
PfamPF008478.9E-10391442IPR001471AP2/ERF domain
PROSITE profilePS5103219.045392450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18392450IPR001471AP2/ERF domain
SMARTSM003801.3E-33392456IPR001471AP2/ERF domain
PRINTSPR003674.8E-6432452IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAAHHHHHH HPPAAAAAAA GAMSSPPDSA  60
TTCNFLFSPP AAQMVAPSPG YYYVGGAYGD GTSTAGVYYS HLPVMPIKSD GSLCIMEVGM  120
MSSSSPKLED FLGCGNGSGH DPATYYSQGQ EAEDASRAAY QHHQLVPYNY QPLTEAEMLQ  180
EAATAPMEDA MAAAKNFLVT SYGACYGNQE MPQPLSLSMS PGSQSSSCVS AAPQQHQQMA  240
VVAAAAAAGD GQGSNSNDGG EQRVGKKRGT GKGGQKQPVH RKSIDTFGQR TSQYRGVTRH  300
RWTGRYEAHL WDNSCKKDGQ TRKGRQGGYD TEDKAARAYD LAALKYWGLS THINFPLENY  360
RDEIEEMERM TRQEYVAHLR RRSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  420
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ITRYDVDKIM ESSSLLPGEA ARKVKAIEAA  480
PDHVPIGREL GATEEASAAT VTGTDWRMVL HGSQQQEAAA CTEATADLQK GFMGDAHSAL  540
HGIVGFDVES AAADEIDVPG GKISGINFSN SSSLVTSLSN SREGSPERLG LAMLYAKHHP  600
TAVSLAAMNP WMPMPAPAAA HVMRPPSAIA HLPVFAAWTD A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063060.0AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629408.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ389141e-139ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0D3FFU50.0A0A0D3FFU5_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011170-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-103AP2 family protein